/**********************************************************************
 InsertFragmentDialog - Inserting fragments using the draw tool

 Copyright (C) 2008 by Geoffrey Hutchison

 This file is part of the Avogadro molecular editor project.
 For more information, see <http://avogadro.openmolecules.net/>

 Avogadro is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.

 Avogadro is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.

 You should have received a copy of the GNU General Public License
 along with this program; if not, write to the Free Software
 Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
 02110-1301, USA.
 **********************************************************************/

#include "insertfragmentdialog.h"
#include "directorytreemodel.h"
// Defines INSTALL_PREFIX among other things
#include <config.h>

#include <avogadro/primitive.h>
#include <avogadro/atom.h>
#include <avogadro/bond.h>
#include <avogadro/molecule.h>

#include <openbabel/obconversion.h>
#include <openbabel/mol.h>
#include <openbabel/builder.h>

#include <QFileDialog>
#include <QMessageBox>
#include <QDir>
#include <QCloseEvent>
#include <QDebug>

using namespace OpenBabel;
namespace Avogadro {

  class InsertFragmentPrivate
  {
  public:
    Molecule     fragment;
    OBConversion conv;
    OBBuilder    builder;
    DirectoryTreeModel *model;

    bool         insertMode;
    bool         smilesMode;

    InsertFragmentPrivate() : insertMode(false)
    { }

    ~InsertFragmentPrivate()
    {
      if (model)
        delete model;
    }

  };

  QStringList DefaultDirectoryList()
  {
    QStringList directoryList;
#ifdef Q_WS_X11
    directoryList << QString( INSTALL_PREFIX ) + "/share/avogadro/fragments";
    directoryList << QDir::homePath() + "/.avogadro/fragments";
#endif
#ifdef Q_WS_WIN
    directoryList << QCoreApplication::applicationDirPath() + "/../share/avogadro/fragments";
#endif
#ifdef Q_WS_MAC
    directoryList << "/Library/Application Support/Avogadro/Fragments";
    directoryList << QDir::homePath() + "/Library/Application Support/Avogadro/Fragments";
#endif

    return directoryList;
  }

  InsertFragmentDialog::InsertFragmentDialog(QWidget *parent, Qt::WindowFlags) : QDialog(parent)
  {
    // Use a small title bar (Qt::Tool) with no minimize or maximize buttons
    // much like the Periodic Table widget
    setWindowFlags(Qt::Dialog | Qt::Tool);

    d = new InsertFragmentPrivate;

    // There has to be a better way to set this based on the installation prefix
    m_directoryList = DefaultDirectoryList();
    d->model = new DirectoryTreeModel(m_directoryList, this);

    ui.setupUi(this);
    ui.directoryTreeView->setModel(d->model);
    ui.directoryTreeView->setSelectionMode(QAbstractItemView::SingleSelection);
    ui.directoryTreeView->setSelectionBehavior(QAbstractItemView::SelectRows);
    ui.directoryTreeView->setUniformRowHeights(true);
    ui.directoryTreeView->expandToDepth(1);

    ui.insertFragmentButton->setFocusPolicy(Qt::NoFocus);

    connect(ui.insertFragmentButton, SIGNAL(clicked(bool)),
            this, SLOT(setupInsertMode(bool)));
    connect(ui.addDirectoryButton, SIGNAL(clicked(bool)),
            this, SLOT(addDirectory(bool)));
    connect(ui.clearListButton, SIGNAL(clicked(bool)),
            this, SLOT(clearDirectoryList(bool)));
  }

  InsertFragmentDialog::~InsertFragmentDialog()
  {
    delete d;
  }

  const Molecule *InsertFragmentDialog::fragment()
  {
    d->fragment.clear();
    OBMol obfragment;

    // SMILES insert
    if (d->smilesMode) {

      // We should use the method because it will grab updates to the line edit
      std::string SmilesString(smilesString().toAscii());
      if(d->conv.SetInFormat("smi")
        && d->conv.ReadString(&obfragment, SmilesString))
        {
        d->builder.Build(obfragment);
        d->fragment.setOBMol(&obfragment);
        d->fragment.center();
        d->fragment.addHydrogens();
      }
    } else {
      QModelIndexList selected = ui.directoryTreeView->selectionModel()->selectedIndexes();
      if (selected.count() != 0) {
        QString file = d->model->filePath(selected.first());
        if (!file.isEmpty()) {
          std::string fileName(file.toAscii());
          //OBFormat *inFormat = d->conv.FormatFromExt(fileName.c_str());
          //if (!inFormat || !d->conv.SetInFormat(inFormat)) {
          OBConversion conv;
          OBFormat *inFormat = conv.FormatFromExt(fileName.c_str());
          if (!inFormat || !conv.SetInFormat(inFormat)) {
            QMessageBox::warning( (QWidget*)this, tr( "Avogadro" ),
                                  tr( "Cannot read file format of file %1." )
                                  .arg( QString(fileName.c_str()) ) );
            return &d->fragment;
          }
          std::ifstream ifs;
          ifs.open(fileName.c_str());
          if (!ifs) {
            QMessageBox::warning( (QWidget*)this, tr( "Avogadro" ),
                                  tr( "Cannot read file %1." )
                                  .arg( QString(fileName.c_str()) ) );
            return &d->fragment;
          }

          //d->conv.Read(&d->fragment, &ifs);
          conv.Read(&obfragment, &ifs);
          d->fragment.setOBMol(&obfragment);
          d->fragment.center();
          ifs.close();
        }
      }
    }

    return &d->fragment;
  }

  const QString InsertFragmentDialog::smilesString()
  {
    if (!ui.smilesLineEdit->text().isEmpty()) {
      m_smilesString = ui.smilesLineEdit->text();
    }
    return m_smilesString;
  }

  void InsertFragmentDialog::setSmilesString(const QString smiles)
  {
    m_smilesString = smiles;
    ui.smilesLineEdit->setText(m_smilesString);
  }

  const QStringList InsertFragmentDialog::directoryList() const
  {
    return m_directoryList;
  }

  void InsertFragmentDialog::setDirectoryList(const QStringList dirList)
  {
    if (dirList.size() != 0)
      m_directoryList = dirList;
    refresh();
  }

  void InsertFragmentDialog::refresh()
  {
    d->model->setDirectoryList(m_directoryList);
    ui.directoryTreeView->update();
  }

  void InsertFragmentDialog::setupInsertMode(bool)
  {
    bool inserting = (ui.insertFragmentButton->text() == tr("Stop Inserting"));

    if(!inserting) {
      if (ui.smilesLineEdit->hasFocus()) {
        d->smilesMode = true;
      } else {
        d->smilesMode = false;
      }
      ui.toolTipLabel->setText(tr("Click to insert the fragment at that position."));
      ui.insertFragmentButton->setText(tr("Stop Inserting"));
      ui.smilesLineEdit->setEnabled(false);
      ui.directoryTreeView->setEnabled(false);
    } else {
      ui.insertFragmentButton->setText(tr("Insert Fragment"));
      ui.toolTipLabel->setText(QString());
      ui.smilesLineEdit->setEnabled(true);
      ui.directoryTreeView->setEnabled(true);
      if (d->smilesMode) {
        ui.smilesLineEdit->setFocus();
      } else {
        ui.directoryTreeView->setFocus();
      }
    }
    emit setInsertMode(!inserting);
  }

  void InsertFragmentDialog::closeEvent(QCloseEvent *event)
  {
    // stop inserting
    if (ui.insertFragmentButton->text() == tr("Stop Inserting"))
      setupInsertMode(false);
    event->accept();
  }

  void InsertFragmentDialog::addDirectory(bool)
  {
    QString dir = QFileDialog::getExistingDirectory(this, tr("Open Directory"),
                                                    "/home");

    // If this is a new directory, add it in
    if (!m_directoryList.contains(dir)) {
      m_directoryList << dir;
      refresh();
    }
  }

  void InsertFragmentDialog::clearDirectoryList(bool)
  {
    m_directoryList.clear();
    m_directoryList = DefaultDirectoryList();
    refresh();
  }

}

#include "insertfragmentdialog.moc"